#722·alphafold

download_all_data.sh failed

Author: kttn8769Created Mar 16, 2023Updated Feb 11, 2026

Hi,

I executed download_all_data.sh as follows, scripts/download_all_data.sh ../data > download.log 2> download_all.log &

but the script failed on the mgnify database preparation.

I have attached the log files.

gzip complained that gzip: ../data/mgnify/mgy_clusters_2022_05.fa.gz: No such file or directory, but that file do exist in the path.

bash
> ls -l ../data/mgnify/mgy_clusters_2022_05.fa.gz
-rw-r--r-- 1 kttn emstf 72741135623 Mar 16 00:30 ../data/mgnify/mgy_clusters_2022_05.fa.gz

Source: google-deepmind/alphafold