download_all_data.sh failed
Author: kttn8769Created Mar 16, 2023Updated Feb 11, 2026
Hi,
I executed download_all_data.sh as follows,
scripts/download_all_data.sh ../data > download.log 2> download_all.log &
but the script failed on the mgnify database preparation.
I have attached the log files.
gzip complained that gzip: ../data/mgnify/mgy_clusters_2022_05.fa.gz: No such file or directory, but that file do exist in the path.
> ls -l ../data/mgnify/mgy_clusters_2022_05.fa.gz
-rw-r--r-- 1 kttn emstf 72741135623 Mar 16 00:30 ../data/mgnify/mgy_clusters_2022_05.fa.gzSource: google-deepmind/alphafold